hcocena - Horizontal Integration and Analysis of Multiple Transcriptomics Datasets

Tools for the joint analysis of multiple transcriptomics datasets using a network-based integration approach. The package provides an S4 object model based on MultiAssayExperiment for reproducible analysis of single-layer and multi-layer studies. It includes workflows for clustering, module visualization, functional annotation, upstream inference, and longitudinal follow-up while retaining compatibility helpers for legacy hCoCena objects.